NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Example ResearchStudy: Baylor Hopkins Center for Mendelian Genomics (BH CMG)

Generated Narrative: ResearchStudy

Resource ResearchStudy "cmg-research-study-bhcmg"

Profile: NCPI Research Study

Research Study Associated Party

url

name

value: 1U54HG006542 National Human Genome Research Institute and National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.

url

role

value: funding-source (research-study-party-role#funding-source)

url

classifier

value: nih ([not stated]#nih)

identifier: http://mendelian.org/fhir/BH-CMG, https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=/phs000711

title: Baylor Hopkins Center for Mendelian Genomics (BH CMG)

status: completed

focus: Mendelian Randomization Analysis (unknown#D057182; unknown#D056769 "Alstrom Syndrome"; unknown#D019571 "Arrhythmogenic Right Ventricular Dysplasia"; unknown#D013576 "Syndactyly"; unknown#D019465 "Craniofacial Abnormalities")

RelatedArtifacts

-TypeLabelDisplayCitationUrl
*documentationacronymBH-CMG
*documentationWebsite https://mendeliangenomics.org/
*citation National Institutes of Health (NIH) support was provided in part by a grant from the National Human Genome Research Institute and the National Heart, Lung, and Blood Institute (1U54HG006542) to Dr. David Valle for the Baylor Hopkins Center for Mendelian Genomics program. The dataset(s) used for the analyses described in this manuscript was obtained from the database of Genotype and Phenotype (dbGaP) found at http://www.ncbi.nlm.nih.gov/gap through dbGaP accession number phs000711.v7.p2.
*citationPublication Gonzaga-Jauregui C, Lupski JR, Gibbs RA Human genome sequencing in health and disease. Annu Rev Med. 2012; 63:35-61. PMID: 22248320
*citationPublication Bamshad MJ, Shendure JA, Valle D, Hamosh A, Lupski JR, Gibbs RA, Boerwinkle E, Lifton RP, Gerstein M, Gunel M, Mane S, Nickerson DA, Centers for Mendelian Genomics The Centers for Mendelian Genomics: a new large-scale initiative to identify the genes underlying rare Mendelian conditions. Am J Med Genet A. 2012 Jul; 158A(7):1523-5. PMID: 22628075
*citationPublication Boone PM, Campbell IM, Baggett BC, Soens ZT, Rao MM, Hixson PM, Patel A, Bi W, Cheung SW, Lalani SR, Beaudet AL, Stankiewicz P, Shaw CA, Lupski JR Deletions of recessive disease genes: CNV contribution to carrier states and disease-causing alleles. Genome Res. 2013 Sep; 23(9):1383-94. PMID: 23685542
*citationPublication Cheung YH, Gayden T, Campeau PM, LeDuc CA, Russo D, Nguyen VH, Guo J, Qi M, Guan Y, Albrecht S, Moroz B, Eldin KW, Lu JT, Schwartzentruber J, Malkin D, Berghuis AM, Emil S, Gibbs RA, Burk DL, Vanstone M, Lee BH, Orchard D, Boycott KM, Chung WK, Jabado N A recurrent PDGFRB mutation causes familial infantile myofibromatosis. Am J Hum Genet. 2013 Jun 06; 92(6):996-1000. PMID: 23731537
*citationPublication Campeau PM, Kasperaviciute D, Lu JT, Burrage LC, Kim C, Hori M, Powell BR, Stewart F, Félix TM, van den Ende J, Wisniewska M, Kayserili H, Rump P, Nampoothiri S, Aftimos S, Mey A, Nair LD, Begleiter ML, De Bie I, Meenakshi G, Murray ML, Repetto GM, Golabi M, Blair E, Male A, Giuliano F, Kariminejad A, Newman WG, Bhaskar SS, Dickerson JE, Kerr B, Banka S, Giltay JC, Wieczorek D, Tostevin A, Wiszniewska J, Cheung SW, Hennekam RC, Gibbs RA, Lee BH, Sisodiya SM The genetic basis of DOORS syndrome: an exome-sequencing study. Lancet Neurol. 2014 Jan; 13(1):44-58. PMID: 24291220
*documentationAdditionalDocumentation https://app.terra.bio/#workspaces/anvil-datastorage/AnVIL_CMG_BaylorHopkins_HMB-IRB-NPU_WES
*documentationGrant1U54HG006542. National Human Genome Research Institute and National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.

description: The Centers for Mendelian Genomics project uses next-generation sequencing and computational approaches to discover the genes and variants that underlie Mendelian conditions. By discovering genes that cause Mendelian conditions, we will expand our understanding of their biology to facilitate diagnosis and new treatments.